diff --git a/mysql/save_cnf.cgi b/mysql/save_cnf.cgi
index d7442af81..4d570eb94 100755
--- a/mysql/save_cnf.cgi
+++ b/mysql/save_cnf.cgi
@@ -103,7 +103,7 @@ foreach $w (@mysql_number_variables, @mysql_byte_variables) {
 
 # Write out file
 foreach my $l (&get_all_mysqld_files()) {
-	&flush_file_lines($l);
+	&flush_file_lines($l, undef, 1);
 	&unlock_file($l);
 	}
 if ($in{'restart'} && &is_mysql_running() > 0) {
diff --git a/mysql/save_ssl.cgi b/mysql/save_ssl.cgi
index af7a793fe..a773cd379 100644
--- a/mysql/save_ssl.cgi
+++ b/mysql/save_ssl.cgi
@@ -64,7 +64,7 @@ else {
 
 # Write out file
 foreach my $l (&get_all_mysqld_files()) {
-	&flush_file_lines($l);
+	&flush_file_lines($l, undef, 1);
 	&unlock_file($l);
 	}
 if (($in{'restart'} || $in{'gen'}) && &is_mysql_running() > 0) {